PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s961171g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 251aa    MW: 28197.4 Da    PI: 6.4034
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s961171g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.2e-51111401129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+ +yLkkk++ +k++l evi+e+d++kvePwdL++  ++ +  ++ewy Fs++d+ky+tg+r+nrat++g+Wkatg+d
  PDK_30s961171g001  11 VPPGFRFHPTDEELLLFYLKKKISFEKFDL-EVIREIDLNKVEPWDLQErcRIGStPQNEWYLFSHKDRKYPTGSRTNRATNNGFWKATGRD 101
                        69****************************.99**************963433332556********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k + + + +++g++ktLvfy grap+g+ktdW+mheyrle
  PDK_30s961171g001 102 KCIRT-SYKKIGMRKTLVFYCGRAPHGQKTDWIMHEYRLE 140
                        ****9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-547146IPR003441NAC domain
PROSITE profilePS5100550.8711161IPR003441NAC domain
PfamPF023651.1E-2612139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MASSSSSNSG VPPGFRFHPT DEELLLFYLK KKISFEKFDL EVIREIDLNK VEPWDLQERC  60
RIGSTPQNEW YLFSHKDRKY PTGSRTNRAT NNGFWKATGR DKCIRTSYKK IGMRKTLVFY  120
CGRAPHGQKT DWIMHEYRLE GSEDAADSSG ASYSHVQVQD LLTNHRPTGY DLSVLPTESS  180
AMVKPYEGGL EVGAGEGMQH VDEGRDQSPN DWTVLDGIDG RFGGAGGEGV QQMNQISGQR  240
GGEMELWGYG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-4851399140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026658225.11e-116protein BEARSKIN1-like
SwissprotQ9C8782e-90BRN1_ARATH; Protein BEARSKIN1
TrEMBLA0A3Q0HXZ41e-115A0A3Q0HXZ4_PHODC; protein BEARSKIN1-like
STRINGXP_008782099.11e-115(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.15e-87NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]