PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s966621g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 255aa    MW: 28889.6 Da    PI: 5.1077
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s966621g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix111.74.3e-3552137187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k ev+aLi++r+ +++r++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+a
  PDK_30s966621g001  52 RWPKAEVHALIKLRSGLDSRYQEAGPKGPLWEEISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESNRKR-PEDSKTCPYFHQLDA 137
                        8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.17845109IPR017877Myb-like domain
SMARTSM007170.008149111IPR001005SANT/Myb domain
CDDcd122034.26E-3151116No hitNo description
Gene3DG3DSA:1.10.10.602.4E-451108IPR009057Homeodomain-like
PfamPF138372.4E-2452138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQPSQQQQEL HQHHQSTEIG RHQVSSSSEL VPVPEQPEPV GTVNFEPVSP SRWPKAEVHA  60
LIKLRSGLDS RYQEAGPKGP LWEEISAGMQ RLGYNRSAKR CKEKWENINK YFKKVKESNR  120
KRPEDSKTCP YFHQLDALYR KKHLGSGGSG SNSGGGIQRH QEQQTDPDPN PQERKDIVKE  180
LMDQRQQQPT MEDYDKMEEP DSDNIDQDDD EDDDEDDEDG KMQYKIQFQR PNVGGGGGTT  240
STAAPTAGSF LAMVQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791630.12e-98trihelix transcription factor GTL1 isoform X1
RefseqXP_008791631.14e-99trihelix transcription factor GTL1 isoform X2
TrEMBLA0A2H3Y0K64e-97A0A2H3Y0K6_PHODC; trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2H3Y0M49e-98A0A2H3Y0M4_PHODC; trihelix transcription factor GTL1 isoform X2
STRINGXP_008791630.16e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-53Trihelix family protein