PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s966651g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 173aa    MW: 19713.4 Da    PI: 6.9397
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s966651g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.5e-39141131100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaC++l rkC++dC+l+pyfpa++p+kf +vhk+FGasnv+k+l+ l+e++reda++s+vyeA+ar++ PvyG++g i+ lq+ +e l+ 
  PDK_30s966651g001  14 PCAACRILHRKCSRDCMLSPYFPADEPEKFGVVHKVFGASNVSKMLQMLEESRREDAVKSMVYEAQARLKHPVYGCTGAIFYLQKSVEDLEG 105
                        7******************************************************************************************9 PP

             DUF260  93 elallkee 100
                         l +++e+
  PDK_30s966651g001 106 RLRATREQ 113
                        99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.31213114IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-3914111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDPHLRAIAK TDIPCAACRI LHRKCSRDCM LSPYFPADEP EKFGVVHKVF GASNVSKMLQ  60
MLEESRREDA VKSMVYEAQA RLKHPVYGCT GAIFYLQKSV EDLEGRLRAT REQLLDERER  120
RDQLLRVLTD TSHGSQFYHA NDLVVDASAM SSDANIIHGH SVRENPGDYY QMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-371411511112LOB family transfactor Ramosa2.1
5ly0_B2e-371411511112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777046.11e-128LOB domain-containing protein 1-like
SwissprotQ9LQR03e-41LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK084e-41LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A2H3X1V21e-126A0A2H3X1V2_PHODC; LOB domain-containing protein 1-like
STRINGXP_008777046.11e-127(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17783510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-41LOB domain-containing protein 1