PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s969551g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 247aa MW: 27728.4 Da PI: 7.4603

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s969551g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	86	105	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ PDK_30s969551g002 86 FSCPVCLKTFNRYNNMQMHM 105 89*****************9 PP
2	zf-C2H2	15.2	6.3e-05	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ PDK_30s969551g002 170 FMCRKCGKAFAVRGDWRTHEKNC 192 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	86	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.31	86	108	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.7E-6	86	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.61E-7	151	190	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.9E-6	166	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	170	190	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	170	190	IPR007087	Zinc finger, C2H2
SMART	SM00355	150	196	219	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MRIDEEADDG DDEPVTVALH IGLPSPSAAD LISRVSSTAE DSGDKEGEGG DDVVLLGYPS 60 TPIGRLNKGQ YWIPTPSQIL IGPTQFSCPV CLKTFNRYNN MQMHMWGHGS QYRKGPESLR 120 GIQPTAMLRL PCYCCAPGCR NNIDHPRSKP LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA 180 VRGDWRTHEK NCGKLWYCIC GSDFKHKRSL KDHIKAFGHG HAAYGIDCFE EEDEPSSEIE 240 QDGDLSR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029118538.1	1e-171	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-135	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2H3Y9Z7	1e-166	A0A2H3Y9Z7_PHODC; zinc finger protein WIP2-like
STRING	XP_008795700.1	1e-167	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-124	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]