PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s969931g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 248aa    MW: 27902.6 Da    PI: 4.7519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s969931g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.6e-145398555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       +  +Er+RR+++N+++  Lr+++P+      +K++Ka+i + A++YI++Lq
  PDK_30s969931g006 53 NIVMERNRRRKLNERLYALRSVVPNI-----TKMDKASIIKDAIDYIQELQ 98
                       5679*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.8374897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.69E-1552102No hitNo description
SuperFamilySSF474598.11E-1952118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-115398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-1754103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1754111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDDMEAEYNF YWETKRFFES EELDSGWGLD EALSGYYDSS SPENAASSVA AKNIVMERNR  60
RRKLNERLYA LRSVVPNITK MDKASIIKDA IDYIQELQEQ ERKMQAEMPA LELGKEEKSP  120
IGETERGDVS FTQRKKKRSS RGSPLAPGSP SLPSIEVMDL KVCEVGDKTL VVSIACNRKR  180
DTMIRMCEVF ESLNLKIITA NITSVSGSLL HTLFVETDEM DCARLKEKIE GAIAELDGSR  240
SPGSSMSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13571071363Transcription factor MYC2
5gnj_B3e-13571071363Transcription factor MYC2
5gnj_E3e-13571071363Transcription factor MYC2
5gnj_F3e-13571071363Transcription factor MYC2
5gnj_G3e-13571071363Transcription factor MYC2
5gnj_I3e-13571071363Transcription factor MYC2
5gnj_M3e-13571071363Transcription factor MYC2
5gnj_N3e-13571071363Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811438.10.0transcription factor bHLH35 isoform X1
SwissprotQ2HIV92e-77BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2H3ZCF00.0A0A2H3ZCF0_PHODC; transcription factor bHLH35 isoform X1
STRINGXP_008811438.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-66bHLH family protein