PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s971681g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 191aa    MW: 22157.5 Da    PI: 6.0293
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s971681g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.4e-191562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEd++l+++++ +G g W+ Iar  g++Rt+k+c++rw++yl
  PDK_30s971681g008 15 KGPWTMEEDLILINYIANHGEGVWNNIARSAGLNRTGKSCRLRWLNYL 62
                       79********************************************97 PP
2Myb_DNA-binding53.55.5e-1768111146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T+eE++l+ ++++++G++ W++Iar ++ gRt++++k++w++
  PDK_30s971681g008  68 RGNITPEEQLLIMELHARWGNR-WSKIARQLP-GRTDNEIKNYWRT 111
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-25865IPR009057Homeodomain-like
PROSITE profilePS5129417.1471062IPR017930Myb domain
SuperFamilySSF466893.88E-3113109IPR009057Homeodomain-like
SMARTSM007172.4E-141464IPR001005SANT/Myb domain
PfamPF002491.7E-171562IPR001005SANT/Myb domain
CDDcd001674.20E-111762No hitNo description
PROSITE profilePS5129425.45263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2466118IPR009057Homeodomain-like
SMARTSM007174.7E-1467115IPR001005SANT/Myb domain
PfamPF002492.8E-1568111IPR001005SANT/Myb domain
CDDcd001679.61E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDKRINSSQE AEVRKGPWTM EEDLILINYI ANHGEGVWNN IARSAGLNRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLIM ELHARWGNRW SKIARQLPGR TDNEIKNYWR TRIQKKVKHG  120
ESFDYQHVML TDEASTSTSQ TNSVEDGGSQ PSYTEQHETN PDALAPQFST ESSDNFWSVE  180
DFWLMQSLNG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800726.11e-142myb-related protein 305-like
SwissprotP813913e-85MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2H3YLY21e-140A0A2H3YLY2_PHODC; myb-related protein 305-like
STRINGXP_008800726.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.19e-78myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]