PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s972071g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 248aa MW: 29176.2 Da PI: 10.1989

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s972071g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.9	1e-49	2	126	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPt+ee++ +yL++kvegk++++ e i+ +d+y+++Pw+Lp ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s PDK_30s972071g002 2 PGFRFHPTEEEIIEFYLRRKVEGKRFDV-ELITFLDLYRYDPWELPGLAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRS 92 9*************************.89***********8777899*********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +glkktLvfy+g+apkg +t+W+m+eyrl PDK_30s972071g002 93 ENARPIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 126 ******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.3	1	147	IPR003441	NAC domain
Pfam	PF02365	8.2E-25	2	126	IPR003441	NAC domain
SuperFamily	SSF101941	3.79E-56	2	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MPGFRFHPTE EEIIEFYLRR KVEGKRFDVE LITFLDLYRY DPWELPGLAA IGEKEWFFYV 60 PRDRKYRNGD RPNRVTTSGY WKATGADRMI RSENARPIGL KKTLVFYSGK APKGIRTSWI 120 MNEYRLPRSE TDRYHKAEIS LCRVYKRSGV EDHLSVMHKP SSSKSTRPDK KHKRQAHSSL 180 QLPTADEFNK MVGDRRGYLN QTNQFIAMPS QHQLLSLTGL PNSLETISDN LWQWNQIHEA 240 GKDFTNFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-55	2	147	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-55	2	147	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-55	2	147	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-55	2	147	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-55	2	147	22	168	NAC domain-containing protein 19
3swm_B	5e-55	2	147	22	168	NAC domain-containing protein 19
3swm_C	5e-55	2	147	22	168	NAC domain-containing protein 19
3swm_D	5e-55	2	147	22	168	NAC domain-containing protein 19
3swp_A	5e-55	2	147	22	168	NAC domain-containing protein 19
3swp_B	5e-55	2	147	22	168	NAC domain-containing protein 19
3swp_C	5e-55	2	147	22	168	NAC domain-containing protein 19
3swp_D	5e-55	2	147	22	168	NAC domain-containing protein 19
4dul_A	4e-55	2	147	19	165	NAC domain-containing protein 19
4dul_B	4e-55	2	147	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008801519.1	1e-128	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-103	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2H3YP36	1e-127	A0A2H3YP36_PHODC; NAC domain-containing protein 35-like
STRING	XP_008801519.1	1e-128	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-106	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]