PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s972611g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 85aa    MW: 9512.74 Da    PI: 9.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s972611g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-0712511554
                       HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +i + +++L++ lP+a + ++ + s +  L+++++YIksL
  PDK_30s972611g004 12 EISELISKLQSALPEARRRGASRASASKLLKETCNYIKSL 51
                       68999**********88999999****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.731151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-81175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-71167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-51251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSRRSRITE EEISELISKL QSALPEARRR GASRASASKL LKETCNYIKS LHREVDDLSD  60
RLSDLVASLD TNSPQAEIVR GLLRS
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784341.11e-52transcription factor ILI5
SwissprotA2X9L87e-38ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX07e-38ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A2H3XIJ43e-51A0A2H3XIJ4_PHODC; transcription factor ILI5
STRINGXP_008784341.15e-52(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-10bHLH family protein