PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s973611g006

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 159aa MW: 17633.2 Da PI: 10.3898

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s973611g006	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.7	7.1e-14	17	90	16	86
trihelix 16 emeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++e l+rg+l++ +We+v+ + +++ +s +qCk+k++nl+kryk + ++ +++ ++s++p+f+++e PDK_30s973611g006 17 GRGEGLNRGNLRGRDWEDVATIVsdrcDKQKAGKSVEQCKNKIDNLKKRYKVECQRLSSG-GLAVSHWPWFKKME 90 5678899*********98777666699999**********************98.78889******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-15	24	92	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MASFFPDFDF PTERARGRGE GLNRGNLRGR DWEDVATIVS DRCDKQKAGK SVEQCKNKID 60 NLKKRYKVEC QRLSSGGLAV SHWPWFKKME QIVGSSSSSS KTAGDEDKSG ALGGTGVVTR 120 QMKRSLLPLP LLFSILILSS MFSPTLSFFL RSGLFYANA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM076489	3e-83	AM076489.1 Cocos nucifera partial mRNA for receptor-like kinase (CnLI gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026656058.1	6e-67	uncharacterized protein LOC103723839 isoform X2
TrEMBL	A0A3Q0HMU2	1e-65	A0A3Q0HMU2_PHODC; uncharacterized protein LOC103723839 isoform X2
STRING	XP_008813118.1	2e-65	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1935	34	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	4e-31	Trihelix family protein