PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s975801g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 198aa    MW: 21847.6 Da    PI: 7.3572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s975801g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-122268354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       r+h e+E+rRR+ri+s +++Lr++l  +     +K +Ka+ L kAve +++L
  PDK_30s975801g005 22 RNHREAEKRRRERIKSHLDRLRTILACD-----PKTDKASLLAKAVERVRDL 68
                       78************************98.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-121573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.911968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-102268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-112377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-92574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGGGGGGGGG DAPTDRALIA SRNHREAEKR RRERIKSHLD RLRTILACDP KTDKASLLAK  60
AVERVRDLKQ RTADITETQL FPTENDEIVV LPSSSSNGER SVFEASLCCE DRSDLLPELI  120
ETLRSLRLKT LRAEIATLGG RVRNVLVLAK EKEEYEEEAE EGEGSGGAFL RDALKALVDR  180
PVSDDRSKRR RVVDRGLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187191KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788501.11e-137transcription factor bHLH106-like
SwissprotO806744e-52BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2H3XTE61e-135A0A2H3XTE6_PHODC; transcription factor bHLH106-like
STRINGXP_008788501.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]