PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s979751g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HB-other
Protein Properties Length: 156aa    MW: 18108.3 Da    PI: 6.3612
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s979751g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.96.9e-081061382254
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +yp+++++++L +++gL+ +q+ +WF N+R +
  PDK_30s979751g004 106 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 138
                        58*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.7179142IPR001356Homeobox domain
SuperFamilySSF466892.52E-1681145IPR009057Homeodomain-like
SMARTSM003892.6E-1081146IPR001356Homeobox domain
CDDcd000861.74E-1182143No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2586145IPR009057Homeodomain-like
PfamPF059203.5E-1899138IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MACREIEQSL QDLTGVTLEE GGGATMSDDE DEHHLDCPLD MSVDGHDMMG FGPLLPTESE  60
RSLMERGFRS KIEDVREEIL RKRRAGKLPG DTTSLLKQWW QQHSKWPYPT EDDKAKLVEE  120
TGLQLKQINN WFINQRKRNW HNNSQSATTL KSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135155RKRNWHNNSQSATTLKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807225.11e-109homeobox protein knotted-1-like 3
SwissprotQ94LW33e-92KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A2H3Z2161e-108A0A2H3Z216_PHODC; homeobox protein knotted-1-like 3
STRINGXP_008807225.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.16e-88KNOTTED-like homeobox of Arabidopsis thaliana 7