PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s981471g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Whirly
Protein Properties Length: 261aa    MW: 28719.9 Da    PI: 10.0292
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s981471g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly207.31.8e-64842221139
             Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 
                        s+yk+kaal+v++++p+f+ ldsg++k++++G++ll++a+a+a+r+ydW++kq+f+ls+ e++ l+ l+ k+sceffhdp+++ s+eGk+rk
  PDK_30s981471g003  84 SIYKGKAALTVEPKAPEFTPLDSGAFKVSKEGFILLQFAPAAAVRQYDWNRKQVFSLSVPEIGALMALSEKDSCEFFHDPFKGRSEEGKIRK 175
                        7******************************************************************************************* PP

             Whirly  93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                        +lk ePlpdGsG+f+nlsv+n l++++es+++P++kaefa+l+s+++
  PDK_30s981471g003 176 VLKAEPLPDGSGHFFNLSVQNRLLNVDESIYIPITKAEFAILKSAFN 222
                        ********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.104.7E-7774243IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544477.69E-7677261IPR009044ssDNA-binding transcriptional regulator
PfamPF085365.3E-5985220IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MPLTGSSPIP LQSSASPHPL LPSNSFKNVL SPGTLAPKKK KLSVSCRRSD YFDQQRLASP  60
APRDSSFAPQ PPGVQSSRVF VGYSIYKGKA ALTVEPKAPE FTPLDSGAFK VSKEGFILLQ  120
FAPAAAVRQY DWNRKQVFSL SVPEIGALMA LSEKDSCEFF HDPFKGRSEE GKIRKVLKAE  180
PLPDGSGHFF NLSVQNRLLN VDESIYIPIT KAEFAILKSA FNFILPHLLG WHAFANAIKP  240
EDSIRSNNMT ARSGAELEWG R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1084725912218p24: plant transcriptional regulator PBF-2
1l3a_B1e-1084725912218p24: plant transcriptional regulator PBF-2
1l3a_C1e-1084725912218p24: plant transcriptional regulator PBF-2
1l3a_D1e-1084725912218p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026665922.10.0single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL851e-112WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A3Q0IL680.0A0A3Q0IL68_PHODC; single-stranded DNA-binding protein WHY1, chloroplastic-like
STRINGXP_008809721.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.21e-115ssDNA-binding transcriptional regulator