PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s982331g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YB

Protein Properties

Length: 171aa MW: 19481.1 Da PI: 8.3984

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s982331g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	143	7.2e-45	32	126	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +eq ++lPianv+rimk++lP++akisk aket+qec+sefisfvt+easd+c++++rkti+gdd++ a+ tlG+++ ++++k yl +yre PDK_30s982331g001 32 SEQSHLLPIANVGRIMKQALPQHAKISKRAKETIQECASEFISFVTEEASDRCRKDDRKTIDGDDICCAMKTLGLDEDADAMKRYLCRYRER 123 6999***************************************************************************************9 PP NF-YB 94 ege 96 e++ PDK_30s982331g001 124 EEK 126 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-41	31	133	IPR009072	Histone-fold
SuperFamily	SSF47113	3.88E-31	35	133	IPR009072	Histone-fold
Pfam	PF00808	1.3E-24	38	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.0E-11	65	83	No hit	No description
PRINTS	PR00615	4.0E-11	84	102	No hit	No description
PRINTS	PR00615	4.0E-11	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MDSSIDGQPY FRVHNCSVPR ATASTASYGC TSEQSHLLPI ANVGRIMKQA LPQHAKISKR 60 AKETIQECAS EFISFVTEEA SDRCRKDDRK TIDGDDICCA MKTLGLDEDA DAMKRYLCRY 120 REREEKTASM KCNKPVQIDV RNELPIFRSS QRRDQLPSKS PHNVAETRKF F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-35	33	122	3	92	Transcription factor HapC (Eurofung)
4g92_B	8e-35	33	122	3	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008813182.1	1e-125	nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	1e-38	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2H3ZGK7	1e-123	A0A2H3ZGK7_PHODC; nuclear transcription factor Y subunit B-4-like
STRING	XP_008813182.1	1e-124	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	5e-41	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]