PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s982941g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 140aa    MW: 15444.7 Da    PI: 10.3558
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s982941g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-11555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT+eE+  l  +v ++G g W+tI +          R+  ++k++w++
  PDK_30s982941g003  5 KQKWTAEEEAALRAGVVKHGAGKWRTILKDPEfsgilCLRSNVDLKDKWRN 55
                       79***********************************66***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.902161IPR017930Myb domain
SuperFamilySSF466893.52E-16271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-14456IPR009057Homeodomain-like
SMARTSM007172.6E-6459IPR001005SANT/Myb domain
PfamPF002491.5E-8555IPR001005SANT/Myb domain
CDDcd116608.64E-19656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALRAGV VKHGAGKWRT ILKDPEFSGI LCLRSNVDLK DKWRNMSVTA  60
NGWGSREKAR IALKKSRQIS KHDDTPKVLN TEVQDIDDEI VDTKPLALSS ESLKITGSKR  120
SISRTSLVVS VATLVSSLEM
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784788.11e-86single myb histone 6-like
RefseqXP_008784789.11e-86single myb histone 6-like
RefseqXP_008784790.11e-86single myb histone 6-like
SwissprotC0HIA33e-45SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2H3XJM03e-85A0A2H3XJM0_PHODC; single myb histone 6-like
STRINGXP_008784788.14e-86(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-46telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]