PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s983711g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18369.1 Da    PI: 10.1667
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s983711g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF572.4e-181563149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       k+ie k  r v fskRr+g++ KA+EL +LC+++v v+ fs+ g+ y++
  PDK_30s983711g007 15 KKIEKKAARDVAFSKRRAGMFSKASELATLCGVDVGVVAFSPAGRPYTF 63
                       68*********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.806767IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-25766IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-22874IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-16929IPR002100Transcription factor, MADS-box
PfamPF003191.2E-221663IPR002100Transcription factor, MADS-box
CDDcd001209.05E-212366No hitNo description
PRINTSPR004048.0E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAERKFRGRQ KIEIKKIEKK AARDVAFSKR RAGMFSKASE LATLCGVDVG VVAFSPAGRP  60
YTFGYPDANV MMDLLSAGRE KRAVLEERLN SESEDPEDRA WPEDLEGLGL ERLARMVRGF  120
EEQRAKARLR VLQIQEQGGS SAGPSAMAVI PMRAAGFGAP GGSGPWIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790449.11e-101agamous-like MADS-box protein AGL29
TrEMBLA0A2H3XY021e-100A0A2H3XY02_PHODC; agamous-like MADS-box protein AGL29
STRINGXP_008790449.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5087022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-20AGAMOUS-like 61