PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s983711g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 206aa    MW: 22375.6 Da    PI: 10.2675
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s983711g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.51.1e-201761145
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       krien+  r+vtfskR+  ++KKA EL +LC+ae+a+++fs+ g+
  PDK_30s983711g008 17 KRIENEDARYVTFSKRKLSLFKKAAELATLCGAEIALVVFSPAGR 61
                       79****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-27968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.207969IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-231081IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-181131IPR002100Transcription factor, MADS-box
PfamPF003191.9E-231864IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-183146IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-184667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MATKPRKTRG RQKVELKRIE NEDARYVTFS KRKLSLFKKA AELATLCGAE IALVVFSPAG  60
RPYSLGLPTI DEVFRRVLSS GPAQVGSGMA GHSVVNPSAE QCSEVAKHLE QERSRKAVLA  120
KRLQMAAPPR WEGGLDGLGW DELLAQVKEV QELKSKVDSR VGEVLLQGSS SSTNPIATVD  180
AWPVGGSAAH PQYRPGGFVR FDHGGW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790450.11e-149agamous-like MADS-box protein AGL29
TrEMBLA0A2H3XYH51e-148A0A2H3XYH5_PHODC; agamous-like MADS-box protein AGL29
STRINGXP_008790450.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.17e-25M-type_MADS family protein