PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s983931g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 204aa    MW: 22580.5 Da    PI: 6.4937
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s983931g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.25.8e-43411401100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+C+++Cvlapyfp ++p kfa +h++FGasn++k+l++lpe++r+da+ss++yeA+ar+rdPvyG++g+i +lq+q+++l++
  PDK_30s983931g003  41 PCAACKILRRRCTEKCVLAPYFPPNEPLKFATAHRVFGASNIIKFLQELPESQRSDAVSSMAYEANARIRDPVYGCAGIICQLQKQVSELQT 132
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++e
  PDK_30s983931g003 133 QLARTQAE 140
                        ***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.51140141IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-4341138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEAGDAATTT TFRHPLSSSP SSSPASSPHL PPASPPVVLS PCAACKILRR RCTEKCVLAP  60
YFPPNEPLKF ATAHRVFGAS NIIKFLQELP ESQRSDAVSS MAYEANARIR DPVYGCAGII  120
CQLQKQVSEL QTQLARTQAE LDTTKTQYAN LVAIICMEMT QSQQQFVRQP PHSFNTNNPN  180
LFQSDASMQD DYFQGSIWEE PLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-43361416111LOB family transfactor Ramosa2.1
5ly0_B8e-43361416111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783779.11e-151LOB domain-containing protein 1-like
SwissprotQ9LQR02e-66LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2H3XHB01e-150A0A2H3XHB0_PHODC; LOB domain-containing protein 1-like
STRINGXP_008783779.11e-151(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-64LOB domain-containing protein 1