PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s988751g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WOX
Protein Properties Length: 694aa    MW: 78366 Da    PI: 7.3038
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s988751g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16e-18375436257
                        T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        ++R+ +t++q+++L +l+++   r p+ae+++++++ l    +++ ++V++WFqN++a+e++
  PDK_30s988751g003 375 STRWIPTADQIRILRDLYYNmgIRSPTAEQIQKISATLrkygKIEGKNVFYWFQNHKARERQ 436
                        58*****************8779*************************************97 PP
2Wus_type_Homeobox107.29.9e-35374438265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRW Pt++Qi+iL++ly+  G+r+P++e+iq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
  PDK_30s988751g003 374 SSTRWIPTADQIRILRDLYYnMGIRSPTAEQIQKISATLRKYGKIEGKNVFYWFQNHKARERQKK 438
                        789***************9869*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530985.69E-7349IPR012337Ribonuclease H-like domain
PfamPF077271.6E-54177330IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566721.16E-8190315No hitNo description
SuperFamilySSF466893.68E-10369441IPR009057Homeodomain-like
PROSITE profilePS5007110.074371437IPR001356Homeobox domain
SMARTSM003897.4E-4373441IPR001356Homeobox domain
CDDcd000861.60E-4376438No hitNo description
PfamPF000462.4E-15376436IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-5377436IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MAKSMMHEAG LPKHFWAEAV YTAVYLINRC PTKAVWHQTP FEAWSGRKPS VKHFKVFGCF  60
CYAQIPKEKR YKLDEASEKC IFVGYSSMSK GYRLYSLKTN NIIISRDVIF DEKAKWNWEQ  120
GKVEEQFVPV TISQQSVVQE DQNNDGSSQP LSSSSPPSSP STQSAPSSSS SSPSSTPLKE  180
EVNVEQPQGF IIEGQEEKVY KLKKALYGLK QVPRAWYSKI DSYFNEQGFE KSKSEPTLYV  240
KNQGTTDILI VALYVDDLVL TGSNAEMIEK FKKEMMRKYE MSDLGLLHHF LGIEVYQDEE  300
GVFISQKMYA EKILKKFRMF GCKPIATPLV VNEKLMKEYG RKKYQQQQHE ESNTSSVVGG  360
SVGGSKSNFL CRQSSTRWIP TADQIRILRD LYYNMGIRSP TAEQIQKISA TLRKYGKIEG  420
KNVFYWFQNH KARERQKKRL TADISSTTST PSNSTITTMS PGAVCMVPVL LLGFMVLGRW  480
EAVAVEALCL WKGALELRHT ILFILFVYPY QALTSHINML IYLNLLDGFM VRHPFLWEQE  540
CCMSGGGGDG SGMESSMGWV GLESAATPWM YRYPLEHEAG APMATREIET LPLFPIKQEE  600
EQEGEQEEKK GEFITHCHLN SCDNTTTTSS SNNHNDGGNQ CLPAFYWGGG QAQDQHHLYN  660
HHHLNDGSGG AAAHQAASLD LTLNSYYYAP PGST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.19e-34WOX family protein