PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s988751g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 177aa    MW: 18901.4 Da    PI: 9.4144
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s988751g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-0579101123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ Cgk F++   L  H ++H
  PDK_30s988751g004  79 YKCSVCGKAFPSYQALGGHKSSH 101
                        9*************999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.3E-1379103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-479101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005279101IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.52E-979101No hitNo description
PROSITE profilePS5015710.76279106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SuperFamilySSF576674.52E-9132159No hitNo description
PfamPF139128.8E-12136160IPR007087Zinc finger, C2H2
SMARTSM003551137159IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286137164IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MALQAPLDSA PSPAALKPAQ EALPWAQEKR SKRHPSSPLQ TQEEYLALCL VMLARGDGHR  60
QPSPSPPPPA SPPSRKLCYK CSVCGKAFPS YQALGGHKSS HRRPTGIEDV RLFSSFAGSG  120
SVSSGGSGGG SEGGRVHRCS VCFRSFPTGQ ALGGHKRCHY WEVSSSVVEL GCHFERF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787218.11e-116zinc finger protein ZAT6
TrEMBLA0A2H3XQF11e-114A0A2H3XQF1_PHODC; zinc finger protein ZAT6
STRINGXP_008787218.11e-115(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-37C2H2 family protein