PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s989101g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 507aa    MW: 54571.1 Da    PI: 8.6816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s989101g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.2e-09318365455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PDK_30s989101g001 318 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 365
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.00E-10312369No hitNo description
SuperFamilySSF474593.53E-17312384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-17314382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663314364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-6318365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10320370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDPSAHFGSA LSSLVSSPSS NPPSTTANDS VVIHELITRL GSICNSDEIP LTSCYQGANT  60
SCSSTPLNSP PKINLSMMEH YQRSSRGLPA SGNPAMPTVH LAPFTADPGF AERAARLSCF  120
GGRSYGGLPE TGKLSSVSSS QSFMGSGSQM GISENIKEIA MQKGAQVEME MRSKLGGRIL  180
GSSTPDSVEF GGGQEESSAS ERITVSGETS SRGNKENHAR KRKAASKGKG KEASLSSSDT  240
NHPKMAEEDD SNAKRSKPAE TDGTGKVAAV KPKAKQNGGA SSSGDAGQKQ GKENYAKPPE  300
PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY  360
VQSLQRQVEF LSMKLATVNP RLDFHMENLL PKDMHQARGP MPTPVYPLEA MSTAFSYPHP  420
PQGTPLQSVV TDGLENQRSL NPLDSSMRRR SRNMQLPPLD GSRDATSQLG TSWEDDLQSV  480
VQMGFGQIEE NAFSSRASMV NHMKIEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813505.10.0transcription factor bHLH62-like isoform X4
TrEMBLA0A2H3ZGH60.0A0A2H3ZGH6_PHODC; transcription factor bHLH62-like isoform X4
STRINGXP_008813504.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-63bHLH family protein