PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s989431g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

M-type_MADS

Protein Properties

Length: 160aa MW: 17918.7 Da PI: 10.4424

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s989431g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.6	6.1e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k+ rqv+fskRr g+lKKA+EL vLCdaev +++fss+gklye++s PDK_30s989431g002 10 RIEDKTSRQVSFSKRRSGLLKKANELAVLCDAEVGLLVFSSKGKLYEFAS 59 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.02	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.8E-37	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.29E-35	3	61	No hit	No description
PRINTS	PR00404	6.5E-29	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-28	3	89	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MVRGRVELRR IEDKTSRQVS FSKRRSGLLK KANELAVLCD AEVGLLVFSS KGKLYEFAST 60 SRKWLSNNFS NYKCFQIELK KIEIKENEWM RGHSVWGDHP KIKGDVGGGD EITAFGCTTV 120 ILRGGDPKSP PLLKSPPNSV MGYPSLRSKI QDHPRAVILG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	4e-17	3	72	2	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	4e-17	3	72	2	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	4e-17	3	72	2	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	4e-17	3	72	2	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3mu6_A	3e-17	3	60	2	59	Myocyte-specific enhancer factor 2A
3mu6_B	3e-17	3	60	2	59	Myocyte-specific enhancer factor 2A
3mu6_C	3e-17	3	60	2	59	Myocyte-specific enhancer factor 2A
3mu6_D	3e-17	3	60	2	59	Myocyte-specific enhancer factor 2A
5f28_A	4e-17	1	60	1	60	MEF2C
5f28_B	4e-17	1	60	1	60	MEF2C
5f28_C	4e-17	1	60	1	60	MEF2C
5f28_D	4e-17	1	60	1	60	MEF2C
6byy_A	5e-17	1	72	1	72	MEF2 CHIMERA
6byy_B	5e-17	1	72	1	72	MEF2 CHIMERA
6byy_C	5e-17	1	72	1	72	MEF2 CHIMERA
6byy_D	5e-17	1	72	1	72	MEF2 CHIMERA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-28	AGAMOUS-like 21