PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s989631g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 454aa MW: 49644.3 Da PI: 8.6567

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s989631g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	56	76	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H PDK_30s989631g002 56 CEICGKGFQRDQNLQLHRRGH 76 *******************88 PP
2	zf-C2H2	13.5	0.00021	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PDK_30s989631g002 130 WKCEKCSKRYAVQSDWKAHSKTC 152 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.9E-5	53	76	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.0E-7	53	76	No hit	No description
SMART	SM00355	0.076	54	76	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.489	54	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2
SMART	SM00355	290	95	125	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-4	118	151	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.0E-7	125	150	No hit	No description
SMART	SM00355	130	130	150	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MAGQAISNVF PLNACQDPNP PPVVKKKRNL PGTPDPEAEV IALSPRTLLA TNRFLCEICG 60 KGFQRDQNLQ LHRRGHNLPW KLRQRSTKEP RKRVYVCPEK SCIHHNPARA LGDLTGIKKH 120 FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGALFSRRDS FITHRAFCDA 180 LAEETARVSA ASSINNMAPM SEANYLFTGG SGRSNMLQSF SSNIEPNISN CEANDQARPG 240 LSLWMGHGIQ SGEPLSSTPT LSDINQIGPV GAGTLYGDLF TSCSNAQQLN TQLSWMCGNK 300 LWPTSTCELT GTSIPTTPMK EVGCSRSLLT SIPSLFSTQH QQHQAPVSDM SATALLQKAA 360 LIGVTPTIPF RGSSGPLKCQ DTQIEDAGKN DGFFNSNQLS NLENIVNGFT ASNGMLIERH 420 RSSLMDDLKG GGETKDFLGV GVQTLCPSLI NGWI

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MAGQAISNVF PLNACQDPNP PPVVKKKRNL PGTPDPEAEV IALSPRTLLA TNRFLCEICG  60
KGFQRDQNLQ LHRRGHNLPW KLRQRSTKEP RKRVYVCPEK SCIHHNPARA LGDLTGIKKH  120
FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGALFSRRDS FITHRAFCDA  180
LAEETARVSA ASSINNMAPM SEANYLFTGG SGRSNMLQSF SSNIEPNISN CEANDQARPG  240
LSLWMGHGIQ SGEPLSSTPT LSDINQIGPV GAGTLYGDLF TSCSNAQQLN TQLSWMCGNK  300
LWPTSTCELT GTSIPTTPMK EVGCSRSLLT SIPSLFSTQH QQHQAPVSDM SATALLQKAA  360
LIGVTPTIPF RGSSGPLKCQ DTQIEDAGKN DGFFNSNQLS NLENIVNGFT ASNGMLIERH  420
RSSLMDDLKG GGETKDFLGV GVQTLCPSLI NGWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-36	126	195	3	72	Zinc finger protein JACKDAW
5b3h_F	8e-36	126	195	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00125	DAP	Transfer from AT1G03840	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783278.1	0.0	zinc finger protein MAGPIE-like
Swissprot	Q9ZWA6	1e-138	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A2H3XGB0	0.0	A0A2H3XGB0_PHODC; zinc finger protein MAGPIE-like
STRING	XP_008783278.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-135	C2H2 family protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]