PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s992571g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 358aa    MW: 38436.9 Da    PI: 5.6298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s992571g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-14172218354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  PDK_30s992571g002 172 KSHSEAERRRRERINAHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 218
                        79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.003169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-11172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14173228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.89E-5182221No hitNo description
Gene3DG3DSA:3.30.70.2603.4E-5255327No hitNo description
CDDcd048737.41E-7255326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MENNGDGSSS KIHEFQGYQE EEQQQQQYNN NNMSNHIGGG GGGQGFVFPD EAAAAAAIGV  60
VGAGGSVASS SILPWPLPPI HPLNSTQFAP SNLVRDQNQG QFFPSLPPLP PPPPPSSPFY  120
GDLYARRATT ALQFAYGGAG LGSSSDPSGL HAELGKLTPQ EIMDAKALAA SKSHSEAERR  180
RRERINAHLA KLRSLLPNTT KTDKASLLAE VIQHVKELKR QTLEIAEESP LPTESDELTV  240
DAGSDEDGRF IVKASLCCDD RSDLLPDLIK ALKALRLRTL KAEITTLGGR VKNVLVITGE  300
DDADHQQQQQ QQQSIASIQE ALKAVMERAA ASDEPSSAGG IKRQRTTNLS TILEHRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026658337.10.0transcription factor bHLH30-like
SwissprotQ9S7Y11e-85BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A3Q0HY370.0A0A3Q0HY37_PHODC; transcription factor bHLH30-like
STRINGXP_008782353.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]