PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s992641g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 252aa    MW: 29139.9 Da    PI: 10.667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s992641g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64e-17241031499
                        T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + l +p kf  +h  +++++  + t+ ++ g+ W v+l  ++ ++++++++GW++F++a+gL +g f+vF ++g++ f  ++k+f++
  PDK_30s992641g001  24 KKLLIPPKFR-QHlANDNHG--EATILSPLGKFWHVNL--QREGREMFFGSGWEDFANAHGLSVGHFLVFLYQGNMVF--TIKIFEN 103
                        3489*****7.664555333..8999************..**********************************9*99..9999976 PP
2B355.41.1e-17164251598
                        -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         ++ ++ +s r+ +pk f+ ++g+ +++  ++tl+d++ r W   +  r +s++ ++++GW+ F + n+LkegD ++F+l++  ++ ++v++
  PDK_30s992641g001 164 IVRLYNVTSMRMAVPKAFCLSNGLTTKC--EITLKDRKQRLWPALF--RLGSREGYIGRGWRCFSEGNDLKEGDKCIFELVS--KKVMRVRI 249
                        56789999***************99777..8***************..88999989***********************986..45468888 PP

                        E- CS
                 B3  97 fr 98 
                        +r
  PDK_30s992641g001 250 VR 251
                        77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-2210106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-2110106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.04311104IPR003340B3 DNA binding domain
CDDcd100172.02E-1812101No hitNo description
SMARTSM010192.7E-1614104IPR003340B3 DNA binding domain
PfamPF023622.1E-1524103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-20156251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-20157251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-15159251No hitNo description
PROSITE profilePS5086314.001160252IPR003340B3 DNA binding domain
SMARTSM010199.8E-13161252IPR003340B3 DNA binding domain
PfamPF023623.3E-15163252IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MATRRSQGAH RPAFFKVLLL ESFKKLLIPP KFRQHLANDN HGEATILSPL GKFWHVNLQR  60
EGREMFFGSG WEDFANAHGL SVGHFLVFLY QGNMVFTIKI FENSGCLKEY GSTASKFADK  120
KEVNLDDEIL DDAPKDIAVE KGRSKSSRRK CPNRRKRVPY FERIVRLYNV TSMRMAVPKA  180
FCLSNGLTTK CEITLKDRKQ RLWPALFRLG SREGYIGRGW RCFSEGNDLK EGDKCIFELV  240
SKKVMRVRIV RR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797610.11e-169putative B3 domain-containing protein Os06g0632500
TrEMBLA0A2H3YF611e-167A0A2H3YF61_PHODC; putative B3 domain-containing protein Os06g0632500
STRINGXP_008797610.11e-168(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-24B3 family protein