PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s993871g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 201aa    MW: 22343.3 Da    PI: 7.3482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s993871g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-0991133754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++ r RR+ri +++  Lr+l+P       +K++ a++L +A++Y+k L
  PDK_30s993871g006  91 IAARHRRERIGERIRILRQLVPGG-----TKMDTASMLDEAIHYVKFL 133
                        56799*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8584133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1490139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1590145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1391144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-692133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-7107138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGNYLLFDHA PFELVQPIDQ LQAHVPSPSF PSDQMEIQRQ AGGGEYEEER LGAMKEMMYK  60
IAAMQPVDID PSTIKKPRRR NVWISDDPQS IAARHRRERI GERIRILRQL VPGGTKMDTA  120
SMLDEAIHYV KFLKRQVQEL QSPHMAQVFT GHPASSMGWP VRPDPHASSS SSSSSMGAPP  180
GLGFGFDGTA DHQIHGGCRG N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026663014.11e-149transcription factor HEC3-like
TrEMBLA0A3Q0I8A11e-147A0A3Q0I8A1_PHODC; transcription factor HEC3-like
STRINGXP_008799041.11e-148(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.14e-36bHLH family protein