PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s994951g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 823aa MW: 94299.5 Da PI: 6.914

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s994951g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.5	2.3e-23	59	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA +vGFsvrk ks rn+ + +r + Cs+eg+r +++ k r+r+etrtgC ++ +k +++gk++vt+++ +HnH+la PDK_30s994951g001 59 DYYVKYAGSVGFSVRKGGWDKSARNN-TRSRVYICSREGFRPKNEAK-----RPRPETRTGCPSRMAIKITSSGKYRVTEFVPDHNHQLA 142 59******************8887.99********998777.....**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-21	59	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.8E-29	240	333	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.52	508	555	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.7E-5	530	557	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.0E-4	530	552	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence Send to blast
MGLFLFFWVG WFFFFFLGTL NRQEEPAEEE PELPEEVVAN AGGVPIVGMV FENEAKAYDY 60 YVKYAGSVGF SVRKGGWDKS ARNNTRSRVY ICSREGFRPK NEAKRPRPET RTGCPSRMAI 120 KITSSGKYRV TEFVPDHNHQ LAAPLDIQLL KSEKLLTKVQ PRGCEKASLI PAGYKNYLRA 180 KRSKDMQVGD TGALLEYLQK MKGDNPSFYY AIQVDEYDQM TNVFWADAKS MIDYHYFGDV 240 VCFDTTYKAN NSGRPFSLFI GVNHHKQTVI FGAAFLYDET VESFKWLFET FKTAMSGKQP 300 KTILTDRCAA IRDAIGAVWP GTTQHCCVWQ IYQHAMKHLA HVFEASETFA HDFSHCIYDF 360 EDEEEFLAAW NSMLEKYNLK DNEWLTKLYE EREKWALVYS RHIFCADIKS TLQEETLSTL 420 LKEYLNSGKD LSEFLKLYEM LVNERRYAEV QADYHVNQGT PRIPPLRLLW QAANEYTPAV 480 FEMFRREFEL FMDCMVYSCG EVGTLSDYEA TVKDKSKEQF IRFDSSDGSI MCSCRKFEHV 540 GIQCCHVLKV LDFRNIKELP PQYLLKRWRK DAKAGSIREG HGLMLDGDPE TSQLHRYNSL 600 CRILYKIAAR AAENEDTFTL MLNQTDQLLQ QVERILQARL LEKPSLANAS RDQHNNLAES 660 GDHDNNYESQ KMSGKKKNNG VVRHRHQSEQ EANRRQKVRK GQPEKAEVAP GDNGPHVAPS 720 NVPSQSRNPS NQFLAPNHFM QGPYVSPHQF GLGTAQNFHP MAQFGQDSSS SALQQQLFHG 780 SAHLTQGYPT PDIHALQFVG SNPQLDHQGG DQGHCAIPVW DFL

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence Send to blast

MGLFLFFWVG WFFFFFLGTL NRQEEPAEEE PELPEEVVAN AGGVPIVGMV FENEAKAYDY  60
YVKYAGSVGF SVRKGGWDKS ARNNTRSRVY ICSREGFRPK NEAKRPRPET RTGCPSRMAI  120
KITSSGKYRV TEFVPDHNHQ LAAPLDIQLL KSEKLLTKVQ PRGCEKASLI PAGYKNYLRA  180
KRSKDMQVGD TGALLEYLQK MKGDNPSFYY AIQVDEYDQM TNVFWADAKS MIDYHYFGDV  240
VCFDTTYKAN NSGRPFSLFI GVNHHKQTVI FGAAFLYDET VESFKWLFET FKTAMSGKQP  300
KTILTDRCAA IRDAIGAVWP GTTQHCCVWQ IYQHAMKHLA HVFEASETFA HDFSHCIYDF  360
EDEEEFLAAW NSMLEKYNLK DNEWLTKLYE EREKWALVYS RHIFCADIKS TLQEETLSTL  420
LKEYLNSGKD LSEFLKLYEM LVNERRYAEV QADYHVNQGT PRIPPLRLLW QAANEYTPAV  480
FEMFRREFEL FMDCMVYSCG EVGTLSDYEA TVKDKSKEQF IRFDSSDGSI MCSCRKFEHV  540
GIQCCHVLKV LDFRNIKELP PQYLLKRWRK DAKAGSIREG HGLMLDGDPE TSQLHRYNSL  600
CRILYKIAAR AAENEDTFTL MLNQTDQLLQ QVERILQARL LEKPSLANAS RDQHNNLAES  660
GDHDNNYESQ KMSGKKKNNG VVRHRHQSEQ EANRRQKVRK GQPEKAEVAP GDNGPHVAPS  720
NVPSQSRNPS NQFLAPNHFM QGPYVSPHQF GLGTAQNFHP MAQFGQDSSS SALQQQLFHG  780
SAHLTQGYPT PDIHALQFVG SNPQLDHQGG DQGHCAIPVW DFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	107	KRPRP
2	692	699	NRRQKVRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026666304.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A3Q0IH99	0.0	A0A3Q0IH99_PHODC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_008811123.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-118	FAR1-related sequence 5