PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s995161g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 348aa    MW: 38949.1 Da    PI: 10.2251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s995161g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.2e-13555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT+eE+e l  +v ++G g W+tI +         +R+  ++k++w++
  PDK_30s995161g001  5 KQKWTPEEEEALRAGVDKHGAGKWRTIQKDPEfshclATRSNIDLKDKWRN 55
                       79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.896161IPR017930Myb domain
SuperFamilySSF466891.22E-15257IPR009057Homeodomain-like
SMARTSM007175.3E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-15556IPR009057Homeodomain-like
PfamPF002492.7E-9555IPR001005SANT/Myb domain
CDDcd116601.30E-20656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGAPKQKWTP EEEEALRAGV DKHGAGKWRT IQKDPEFSHC LATRSNIDLK DKWRNMSIGA  60
CGHGSREQIR APKVKGLPAI PSTNSRKLIV SAPQKDAGVR AMVNPTKNSH DGKNPPRFEY  120
QFQVGCPEPT TKADFLFPPS ILVSGLRGDL FLQFLVSICV HQTSLWLDLA LTEKTLKFHH  180
MKKKHEVPQN FRRLLSSKLR RLVAQNKIEK IGIQIYLMEP SAIFFKTLIL VDTFAVSCNA  240
SAHDTFTHLP VHVQKGYRLK DSSFATKTLT LKQKDPANRS KLPQNFGSCI SLNSIKDAAI  300
TAAYKIADAE AKSFLASEAV KEAEKISKMV EETDSLLLLA KEIFERCK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806863.11e-160single myb histone 4-like isoform X1
TrEMBLA0A2H3Z1K81e-158A0A2H3Z1K8_PHODC; single myb histone 4-like isoform X1
STRINGXP_008806863.11e-159(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-30MYB_related family protein