PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s997411g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 223aa MW: 24769.3 Da PI: 10.1561

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s997411g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.3	7.8e-33	2	77	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++s ++elvglkktLvfykgrap+gekt+Wvmheyrl PDK_30s997411g002 2 GEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFSGqTSELVGLKKTLVFYKGRAPRGEKTNWVMHEYRL 77 579***********************************9757778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.822	1	98	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-38	2	98	IPR003441	NAC domain
Pfam	PF02365	1.4E-15	6	77	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MGEKEWYFFS LRDRKYPTGV RTNRATNAGY WKTTGKDKEI FSGQTSELVG LKKTLVFYKG 60 RAPRGEKTNW VMHEYRLQPK SATKANKDEW VVCRVFMKSS SGKKYLSSQP RGNPYHHHLG 120 MVQPEACHFG LSRFARGTPG SNLPIQPQFN FPPYNLSGLN VNLGPLRTMP VPLAQQPQLV 180 PEPPSSMLAN NCVMAADGGF MSIADGVVTS AGTGVRINAE AEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-35	1	104	68	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-35	1	104	68	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-35	1	104	68	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-35	1	104	68	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-35	1	104	71	174	NAC domain-containing protein 19
3swm_B	6e-35	1	104	71	174	NAC domain-containing protein 19
3swm_C	6e-35	1	104	71	174	NAC domain-containing protein 19
3swm_D	6e-35	1	104	71	174	NAC domain-containing protein 19
3swp_A	6e-35	1	104	71	174	NAC domain-containing protein 19
3swp_B	6e-35	1	104	71	174	NAC domain-containing protein 19
3swp_C	6e-35	1	104	71	174	NAC domain-containing protein 19
3swp_D	6e-35	1	104	71	174	NAC domain-containing protein 19
4dul_A	5e-35	1	104	68	171	NAC domain-containing protein 19
4dul_B	5e-35	1	104	68	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008801396.1	1e-157	protein CUP-SHAPED COTYLEDON 2-like
TrEMBL	A0A2H3YP64	1e-156	A0A2H3YP64_PHODC; protein CUP-SHAPED COTYLEDON 2-like
STRING	XP_008801396.1	1e-157	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	5e-58	NAC domain containing protein 38