PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s998731g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 230aa    MW: 26092.9 Da    PI: 9.7711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s998731g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.94.4e-3227754128
                NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +ekewyfFs +d+ky+tg r+nrat++gyWk tgkd+e++++ ++el+g+kktLvfykgrap+gekt+Wvmhey l
  PDK_30s998731g001   2 GEKEWYFFSLKDRKYPTGLRTNRATSAGYWKITGKDQEIFNRhTSELIGMKKTLVFYKGRAPRGEKTSWVMHEYCL 77 
                        579**************************************977888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.986199IPR003441NAC domain
SuperFamilySSF1019411.2E-36299IPR003441NAC domain
PfamPF023651.2E-14677IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGEKEWYFFS LKDRKYPTGL RTNRATSAGY WKITGKDQEI FNRHTSELIG MKKTLVFYKG  60
RAPRGEKTSW VMHEYCLQSK TKTTFEAQKE WVVCRVFKKS CREKRCLPSQ PQPDHQKLQK  120
SSAFMPSVTQ AKTYQVAGSR KGYTELTRPS KAILGLSPPS QPQFGSAGSF TLSSGLGLLH  180
PTVAAMEAWT NCILSSADME VWLPHVDSNV ELENYWPPCL SGKETHESLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-2919968165NO APICAL MERISTEM PROTEIN
1ut4_B4e-2919968165NO APICAL MERISTEM PROTEIN
1ut7_A4e-2919968165NO APICAL MERISTEM PROTEIN
1ut7_B4e-2919968165NO APICAL MERISTEM PROTEIN
4dul_A4e-2919968165NAC domain-containing protein 19
4dul_B4e-2919968165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781922.11e-173NAC domain-containing protein 100-like
TrEMBLA0A2H3XCU71e-172A0A2H3XCU7_PHODC; NAC domain-containing protein 100-like
STRINGXP_008781922.11e-173(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5075022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-53NAC domain containing protein 38