PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s999072g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 65aa MW: 7349.53 Da PI: 9.4742

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s999072g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.5e-08	14	45	1	31
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartm 31 +g+W++eEd +l++ +++ G+g +W + +++ PDK_30s999072g001 14 KGPWSPEEDSKLKEFIEKNGTGgNWIALPHKA 45 79********************9997777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-10	5	44	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.12	9	48	IPR017877	Myb-like domain
SuperFamily	SSF46689	8.22E-7	11	48	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	14	44	IPR001005	SANT/Myb domain
CDD	cd00167	0.00132	16	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEFIE KNGTGGNWIA LPHKAEHRKW VLMISFKCHM 60 GGRPD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006491666.1	3e-25	transcription factor RAX2
Refseq	XP_024038144.1	3e-25	transcription factor RAX2
Swissprot	Q9SJL7	8e-24	RAX2_ARATH; Transcription factor RAX2
TrEMBL	V4SS01	3e-24	V4SS01_9ROSI; Uncharacterized protein
STRING	XP_006428450.1	5e-25	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	3e-26	MYB family protein

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]