PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s999931g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 263aa    MW: 31494.4 Da    PI: 8.2201
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s999931g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.42.5e-2535116186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +Wt+ e+++ +++r e ++++ ++k++kplWe++s+++r++gf+r+p+qCk+kw+nl  r+k i+++++++    s+++p++++l+
  PDK_30s999931g002  35 QWTHAETKEFLAVRAEFDRSFMETKRNKPLWEAISARLRQKGFNRTPEQCKSKWKNLVSRFKGIEAMDGEG----SRQFPFLEELR 116
                        7********************************************************************97....78899999986 PP
2Myb_DNA-binding22.42.9e-073591347
                       SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47
                        WT  E + ++ + +++             W++I++++     +Rt++qcks+w ++
  PDK_30s999931g002 35 QWTHAETKEFLAVRAEFDRSfmetkrnkpLWEAISARLRqkgFNRTPEQCKSKWKNL 91
                       59999999999999999966999999999***********9989***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.2932892IPR017877Myb-like domain
SMARTSM007171.6E-73294IPR001005SANT/Myb domain
CDDcd122031.91E-203499No hitNo description
SuperFamilySSF466899.72E-63494IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-53594IPR009057Homeodomain-like
PfamPF138373.7E-2035117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MELHHHYNPY YINVNPVPEG GGGGERDRER DRFPQWTHAE TKEFLAVRAE FDRSFMETKR  60
NKPLWEAISA RLRQKGFNRT PEQCKSKWKN LVSRFKGIEA MDGEGSRQFP FLEELRTIFS  120
ARMERLQVSK KDKGKGVQVQ GEEWGEEEEE EEEEEEEAPV RRCTSDMKLL GVVWMRSKKK  180
KRVERTRRFE EEVENALKEF ARRQLEMQAR WIAAAEAREA ERKAKEEEWR RAMDALEEER  240
KTMERTWRER EEERRARGGG RGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A2e-1436114786DNA binding protein GT-1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026661284.11e-117trihelix transcription factor GT-3b
TrEMBLA0A3Q0I3A71e-115A0A3Q0I3A7_PHODC; trihelix transcription factor GT-3b
STRINGXP_008795368.11e-110(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-36Trihelix family protein