PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_00296

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

SRS

Protein Properties

Length: 257aa MW: 27992.3 Da PI: 7.6754

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_00296	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	88.2	1.9e-27	68	127	3	62
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk 62 +g ++CqdCG qa+k+C+h+RC+ CCk+rgf C+thvkstWvpaakrr+r q+la +s+ PEQU_00296 68 NGLITCQDCGIQARKNCSHMRCQVCCKNRGFYCQTHVKSTWVPAAKRRQRNQKLAGGESS 127 57789*********************************************9999876554 PP
2	DUF702	73.3	7.4e-23	134	185	104	152
DUF702 104 s...lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + +P+ev +avfrcvrv+ +d+ ee+laYqtavsi GhvfkG+LydqG+ PEQU_00296 134 QgviFPAEVTLPAVFRCVRVRQMDETEEQLAYQTAVSIKGHVFKGLLYDQGP 185 2344***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-23	71	127	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-21	72	114	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	3.6E-20	137	185	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.5E-21	138	185	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MAGFYLGGSG DGYGYQRGDE QESFFFYNRT RREGQPIWQQ QEQLFSVPSG SLLAFGSGGD 60 ELAGEYRNGL ITCQDCGIQA RKNCSHMRCQ VCCKNRGFYC QTHVKSTWVP AAKRRQRNQK 120 LAGGESSRRA VGDQGVIFPA EVTLPAVFRC VRVRQMDETE EQLAYQTAVS IKGHVFKGLL 180 YDQGPVLSSA ENQMHLAGEC LSGGAAVTAG GFAPGMDIGG RTAVGGDFET DSSSMYPNPV 240 GAFMTGTLFF SQQTQKH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020599954.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	3e-47	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A2I0VXS7	1e-111	A0A2I0VXS7_9ASPA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-49	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]