PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00352
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 249aa    MW: 29239.6 Da    PI: 6.0217
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00352genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-171150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i n s r  tf kRr+g+lKK eELS+LCd+++++i++++
  PEQU_00352 11 IANGSARRATFKKRRKGVLKKVEELSTLCDVKACLIVYGP 50
                8899**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.194149IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-23160IPR002100Transcription factor, MADS-box
CDDcd002661.76E-29285No hitNo description
SuperFamilySSF554553.4E-24395IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-11323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MARKKVKLEW IANGSARRAT FKKRRKGVLK KVEELSTLCD VKACLIVYGP GESQPEVWPS  60
PQEANRVLAK LRRLPEMEQS RKMMNQEGFI RHRITKLQEQ IRKQDRENRE LETMLLMQQG  120
LAGKINLQSI ESRSLTSLAW LIELKMKEVR KRLELLPLER AAKRVEVKQE EEEEELPPMA  180
EISKEDEQGT AATPEGKERK VFDREAMEDL QRQEWFCEFM NPQDEIMDND SLYFEHAGPA  240
WLDDDFPKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLEWIANGSARRATFKKRR
22125KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576285.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A0D3QNZ51e-124A0A0D3QNZ5_9ASPA; MADS-box protein 28
STRINGXP_008801454.12e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-44AGAMOUS-like 80