PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00455
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family AP2
Protein Properties Length: 184aa    MW: 21468.9 Da    PI: 10.0356
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00455genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-171777156
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56
                s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g+
  PEQU_00455 17 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDEEEAAARAYDLAALKYWGH 77
                78*******************999955656446*************************997 PP
2AP254.23.6e-17119170155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a+++a+ +++g
  PEQU_00455 119 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDKAAIEYRG 170
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-141777IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-181786IPR016177DNA-binding domain
PROSITE profilePS5103220.3231884IPR001471AP2/ERF domain
SMARTSM003801.8E-271890IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-171886IPR001471AP2/ERF domain
PRINTSPR003671.4E-61930IPR001471AP2/ERF domain
PfamPF008471.9E-12119170IPR001471AP2/ERF domain
CDDcd000182.70E-22119180No hitNo description
SuperFamilySSF541714.64E-18119180IPR016177DNA-binding domain
SMARTSM003802.9E-25120184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18120179IPR001471AP2/ERF domain
PROSITE profilePS5103217.938120178IPR001471AP2/ERF domain
PRINTSPR003671.4E-6160180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
RKSRKSVPRD FPSQRSSVYR GVTRHRWTGR YEAHLWDKNC WNESQNKKGR QVYLGAYDEE  60
EAAARAYDLA ALKYWGHDTT LNFPLSNYEE EVKDMDGLSK EEYIGTLRRK SSGFSRGVSK  120
YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA YDKAAIEYRG LNAVTNFKLS  180
HYIK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020595243.11e-135AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN45e-98AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2B9731e-117A0A2K2B973_POPTR; Uncharacterized protein
STRINGXP_004507769.11e-116(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.18e-95ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]