PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00744
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 518aa    MW: 57330.4 Da    PI: 9.7272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00744genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-0593115123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C+ C+k F r  nL+ H r H
  PEQU_00744  93 FICEVCNKGFQREQNLQLHRRGH 115
                 89*******************88 PP
2zf-C2H212.70.00038170192123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k++  +s+ k H +t+
  PEQU_00744 170 WKCDKCSKRYAVQSDWKAHSKTC 192
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-692115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-792115No hitNo description
SMARTSM003550.005293115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9993115IPR007087Zinc finger, C2H2
PfamPF121712.5E-593115IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-4158191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-7165190No hitNo description
SMARTSM00355140170190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
RPTATKMAAA SSSSPFFSIR DEENLNHLRQ QQMNNIQAPP PVSSIPTPSS NLQVLPAPLK  60
KKRNLPGNPS KYLYPDAEVI ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK  120
LKQKSNKEVR RRRVYLCPEP SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA  180
VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARIPT NITNISNHLY  240
GGATINLGHS HLNPHLPPSS HADLLRLGDP LISSSQPSSF RPPPPPTFFL PNDNFQNKPP  300
PFHSLMQLPD LQPNSTGPSS SPMLFNPNPH HLMILHDQFA ANATDPPNLY DQMHPLFNTS  360
LQNDSVNLPQ MSATALLQKA AQMGATSSNN SIKGFGSSSS TRSHVENGNH LQDIMNSFAN  420
GNSGIFTAGG GETQAKFEDY NAGFCHLDEG NYHHNNGMTR DFLGVGSLLR SMGGGISSQR  480
EQQQQPQNHG VIDIPGSLNN TEMKPASSSR SFASGNPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-36166230367Zinc finger protein JACKDAW
5b3h_F8e-36166230367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598828.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_020598837.10.0protein indeterminate-domain 5, chloroplastic-like isoform X2
SwissprotQ8GYC11e-116IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A2I0X8J30.0A0A2I0X8J3_9ASPA; Zinc finger protein MAGPIE
STRINGXP_008811073.11e-179(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-114indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]