PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00834
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 188aa    MW: 21148.2 Da    PI: 10.3833
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00834genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.23.9e-343390259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                +Dgy+WrKYGqK vk+s+fprsYYrCtsa C vkk+vers++dp+vv++tYeg+H+h+
  PEQU_00834 33 EDGYRWRKYGQKAVKNSPFPRSYYRCTSALCGVKKRVERSSNDPTVVVTTYEGQHTHP 90
                8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-351792IPR003657WRKY domain
SuperFamilySSF1182903.01E-292492IPR003657WRKY domain
PROSITE profilePS5081131.9732792IPR003657WRKY domain
SMARTSM007748.5E-403291IPR003657WRKY domain
PfamPF031063.1E-273390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGSESKGRKK KGQKRKREPR FAFLTQSEVD HLEDGYRWRK YGQKAVKNSP FPRSYYRCTS  60
ALCGVKKRVE RSSNDPTVVV TTYEGQHTHP SPIISRGTHH FPASSPELVD LHRFQLQSSY  120
LLSSQPLNLR PVITGAPAPL APPQRPISVA GFGERSYCDA AIGIGLRDHG LLQDLIPSEV  180
MMKRELLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-2925921077Probable WRKY transcription factor 4
2lex_A6e-2925921077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591195.11e-137probable WRKY transcription factor 71
SwissprotQ9FGZ49e-47WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A2R4LUZ61e-108A0A2R4LUZ6_CYMEN; Putative WRKY transcription factor 12
STRINGXP_008781154.14e-59(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.17e-46WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]