PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_01296
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 237aa    MW: 26660.1 Da    PI: 6.7962
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_01296genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.2e-51111371128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelvv+yL++k++ ++ +l  +i+evd+yk+ePwdLp ++  ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v  + +g+
  PEQU_01296  11 LPPGFRFHPTDEELVVHYLCRKAAPTP-PL-PIIAEVDLYKYEPWDLPDMAMFGTKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPQgSGR 107
                 79********************99998.44.57***************66667899*************************************997888 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kk Lvfy+g+apkg ktdW+mheyrl
  PEQU_01296 108 AVGIKKALVFYDGKAPKGIKTDWIMHEYRL 137
                 9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-617163IPR003441NAC domain
PROSITE profilePS5100560.80911163IPR003441NAC domain
PfamPF023655.5E-2712137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
RSRDAEAELN LPPGFRFHPT DEELVVHYLC RKAAPTPPLP IIAEVDLYKY EPWDLPDMAM  60
FGTKEWYFFT PRDRKYPNGS RPNRAAGRGY WKATGADKPV APQGSGRAVG IKKALVFYDG  120
KAPKGIKTDW IMHEYRLADV NRSAKGSGSL RLDDWVLCRL YNKKNNWGKM GKSSIEQNDD  180
ARSESLMTPE SGIELPDFDE FGDAGFGRGM QAAAAVPAIK EDYDWYSGLN LGDFQMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-9111695174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598301.11e-171NAC domain-containing protein 68-like
SwissprotQ52QH41e-104NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A2I0WKA01e-146A0A2I0WKA0_9ASPA; NAC domain-containing protein 68
STRINGXP_008782755.11e-114(Phoenix dactylifera)
STRINGGSMUA_Achr6P32330_0011e-114(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.18e-87NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]