PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_01300

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

SBP

Protein Properties

Length: 983aa MW: 109703 Da PI: 7.5588

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_01300	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.2	3.4e-36	142	217	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 CqvegC adls+ k+y+rrhk+Ce+h+ka++v++ +++qrfCqqCsrfh l+efDe+krsCr+ L +hn+ r+kk+ PEQU_01300 142 CQVEGCGADLSNFKDYYRRHKLCEMHAKASSVALGNVMQRFCQQCSRFHLLQEFDERKRSCRQSLRDHNDIRKKKH 217 **********************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.4E-32	138	203	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.205	139	216	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-34	140	217	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.6E-29	142	215	IPR004333	Transcription factor, SBP-box
CDD	cd00204	5.97E-11	737	867	No hit	No description
SuperFamily	SSF48403	1.26E-8	763	867	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.7E-8	765	870	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence Send to blast
MRGDIHQFFT TESSNGHKQK TQEWDLNEWK WDGERFVAAP VTPGSLDYRN KQPFHGVVVS 60 NTSSAGSDEF NFGIVGKGLG ETDKRRRILV VGDDKQCDEV GSLTLKIGGH VYPVRDEDLE 120 VGGMKNGKRG MVQASNLNIP KCQVEGCGAD LSNFKDYYRR HKLCEMHAKA SSVALGNVMQ 180 RFCQQCSRFH LLQEFDERKR SCRQSLRDHN DIRKKKHSVV SPIKGSAADN QSTNHLLISV 240 LKILGNLSSD KFQHSKDSEL LWNFVKNIAP LACSSDTNKI SRLLQASHDI QKVGTSAGIS 300 GEVADALLSG VLKPSRLPAK TKCAPTMATN QCAPVSAAPR EMQCQLEALC SLQHMLPAAG 360 TVEDERTMGF DLNAPYVEEP NGELGCEKPS KQATAVNGSP NCSPWVVKDC HQSNQPQICG 420 NPDSTSTRSL SSSNGDAQSR TDRIVFKLFG KDPNDLPLAL RAQIFDWLSH SPTDMESYIR 480 PGCIILTVYL RLSLSAWDEL CHDLVSSLNK LICLSADNFW QSGWICARLQ HQLALIYNGQ 540 VVLNKSLVVE RNSYSKILSV TPIAAPPCSR VTFNVKVSNL VRSTTRLHCA FEGRYLSQEI 600 DQTSVYCSNN ERNHEQIQFL SFSCRLSDAI GQGFIEIEDD GLSSVFFPFI VAEEDVCTEI 660 RMLESSIDLV PCDEVMEEKL EAARSLGVNF LHEMGWLLRR SHLSSKSDSE NYHSEAFSLA 720 RFRWILRFSV DRDWSAIVRK LLNILFDGII DLGGISPTII ALSENLLHYA VQRNSKLTVK 780 LLLRYKPCRS VDRGIDNLFR PDMAGPSNIT PLHVAATSIH AESMLDLLTD DPGQFGLKAW 840 KNAHDNSGFT PEDYAIARGH QSYITLMQKK INKNTQNFDF SVNIPSKSIF TPDPTHKQSK 900 KQSGLDIEKN KSKLSQPPFC KFCEHSSTYR SSGGSSLMYR PMLLSMLGIA AVCVCVALLF 960 KGPPEVLFVY PPFRWELLEY GFM

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence Send to blast

MRGDIHQFFT TESSNGHKQK TQEWDLNEWK WDGERFVAAP VTPGSLDYRN KQPFHGVVVS  60
NTSSAGSDEF NFGIVGKGLG ETDKRRRILV VGDDKQCDEV GSLTLKIGGH VYPVRDEDLE  120
VGGMKNGKRG MVQASNLNIP KCQVEGCGAD LSNFKDYYRR HKLCEMHAKA SSVALGNVMQ  180
RFCQQCSRFH LLQEFDERKR SCRQSLRDHN DIRKKKHSVV SPIKGSAADN QSTNHLLISV  240
LKILGNLSSD KFQHSKDSEL LWNFVKNIAP LACSSDTNKI SRLLQASHDI QKVGTSAGIS  300
GEVADALLSG VLKPSRLPAK TKCAPTMATN QCAPVSAAPR EMQCQLEALC SLQHMLPAAG  360
TVEDERTMGF DLNAPYVEEP NGELGCEKPS KQATAVNGSP NCSPWVVKDC HQSNQPQICG  420
NPDSTSTRSL SSSNGDAQSR TDRIVFKLFG KDPNDLPLAL RAQIFDWLSH SPTDMESYIR  480
PGCIILTVYL RLSLSAWDEL CHDLVSSLNK LICLSADNFW QSGWICARLQ HQLALIYNGQ  540
VVLNKSLVVE RNSYSKILSV TPIAAPPCSR VTFNVKVSNL VRSTTRLHCA FEGRYLSQEI  600
DQTSVYCSNN ERNHEQIQFL SFSCRLSDAI GQGFIEIEDD GLSSVFFPFI VAEEDVCTEI  660
RMLESSIDLV PCDEVMEEKL EAARSLGVNF LHEMGWLLRR SHLSSKSDSE NYHSEAFSLA  720
RFRWILRFSV DRDWSAIVRK LLNILFDGII DLGGISPTII ALSENLLHYA VQRNSKLTVK  780
LLLRYKPCRS VDRGIDNLFR PDMAGPSNIT PLHVAATSIH AESMLDLLTD DPGQFGLKAW  840
KNAHDNSGFT PEDYAIARGH QSYITLMQKK INKNTQNFDF SVNIPSKSIF TPDPTHKQSK  900
KQSGLDIEKN KSKLSQPPFC KFCEHSSTYR SSGGSSLMYR PMLLSMLGIA AVCVCVALLF  960
KGPPEVLFVY PPFRWELLEY GFM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-25	142	215	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	87	KRRRI
2	197	215	RKRSCRQSLRDHNDIRKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020584886.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	M9QTS3	0.0	M9QTS3_9ASPA; SQUAMOSA promoter-binding-like 8
STRING	XP_008810336.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1