PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_01589

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

S1Fa-like

Protein Properties

Length: 75aa MW: 8338.06 Da PI: 10.6812

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_01589	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	133.9	3.9e-42	9	75	4	70
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +++e+kGlnP livllv+ +lll+f+vgny+lyvyaqk+lPP+kkkP+skkk+k+e+lkqGv++PGe PEQU_01589 9 VEEESKGLNPSLIVLLVIVTLLLLFFVGNYALYVYAQKTLPPKKKKPISKKKMKKERLKQGVSAPGE 75 68999*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	6.0E-5	7	75	No hit	No description
Pfam	PF04689	9.5E-40	10	75	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
AKQGNNVIVE EESKGLNPSL IVLLVIVTLL LLFFVGNYAL YVYAQKTLPP KKKKPISKKK 60 MKKERLKQGV SAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020597176.1	3e-43	DNA-binding protein S1FA
Swissprot	Q7XLX6	1e-23	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	W9SCA3	4e-23	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	XP_010104121.1	7e-24	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]