PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_01669
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 220aa    MW: 24064.9 Da    PI: 10.2303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_01669genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-1258104455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k Lq
  PEQU_01669  58 DHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKTLQ 104
                 6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.05354103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-1757120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-1058104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1758116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-1159108No hitNo description
SMARTSM003534.1E-1460109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MLSFGRETSE LYKDLVIGAA NPSIGLKRSY EAMAAASQGK KKEAGVLVQR PNSSHNQDHI  60
LAERKRREKL SQRFIALSAI VPGLKKMDKA SVLGDAIKYL KTLQDKVRTL EEQAAKRTVE  120
TAVLVKKSHI SAEEENEASS SDENFAGDGS RLPEIEVKLS GKSLLIKIHC ENIRGVLVRA  180
LLEIQKLQLA LVSVSSVAFA ASSLDITVMA QVAFRRTPII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1558107857Transcription factor MYC2
5gnj_B2e-1558107857Transcription factor MYC2
5gnj_E2e-1558107857Transcription factor MYC2
5gnj_F2e-1558107857Transcription factor MYC2
5gnj_G2e-1558107857Transcription factor MYC2
5gnj_I2e-1558107857Transcription factor MYC2
5gnj_M2e-1558107857Transcription factor MYC2
5gnj_N2e-1558107857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267ERKRRE
26368RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020600208.11e-148transcription factor bHLH18-like
SwissprotQ9T0725e-47BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2I0BFD61e-88A0A2I0BFD6_9ASPA; Transcription factor bHLH25
STRINGXP_008790398.11e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-41bHLH family protein