PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_01676
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 254aa    MW: 29056.8 Da    PI: 5.0253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_01676genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-134584344
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     ++++eE+   +d+ +++G++ W++I+ +++ gRt++++k++w
       PEQU_01676 45 KFSAEEERVVIDLQARFGNK-WARISTHLP-GRTDNDVKNFW 84
                     79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-10142IPR009057Homeodomain-like
PROSITE profilePS500905.831136IPR017877Myb-like domain
SuperFamilySSF466892.03E-19284IPR009057Homeodomain-like
CDDcd001677.95E-6236No hitNo description
SMARTSM0071742238IPR001005SANT/Myb domain
PROSITE profilePS5129418.3843792IPR017930Myb domain
SMARTSM007171.5E-104290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-164390IPR009057Homeodomain-like
PfamPF002491.7E-114584IPR001005SANT/Myb domain
CDDcd001671.96E-104584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDYVAKYGPH DWSSIRSKGL LFRSGKSCRL RYVNKLKPGL KSGCKFSAEE ERVVIDLQAR  60
FGNKWARIST HLPGRTDNDV KNFWSIRQKR LAKLLQTSSP VRPLIKQRKA NGNSDYYPYN  120
VPQYPNSEHM YEPYYEGPDA MKMVVMPNNP EANLPQIEPA INAQEPCLQS SSPPPPSPFD  180
NFLDLPLLSD GEDLIMQELG EMSFPDQFDC VETSLTLFDE FEVEDSGIRR EHLGTPESFF  240
DDFPAXXXXX XXXC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-1919039126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020600221.10.0myb-related protein MYBAS2-like
TrEMBLA0A200Q2N03e-67A0A200Q2N0_9MAGN; SANT/Myb domain
STRINGXP_008807969.17e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-50MYB family protein