PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_01742
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-YA
Protein Properties Length: 132aa    MW: 14626.4 Da    PI: 10.2153
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_01742genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA933.8e-2941101158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheS....RhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpy+h+     Rh hA+rR+Rg+gGrF
  PEQU_01742  41 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRKPYIHHTfmnlRHLHAMRRARGNGGRF 101
                 69****************************.*********977777***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-3139104IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115230.39440104IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-2442101IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.0E-174365IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068604565IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.0E-1778101IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
AYPYVDPYYG GIIAAYSSQH VMHPTMTGIM PGVPLPTDAV EEPVYVNAKQ YHGILRRRQS  60
RAKAESENKL IKSRKPYIHH TFMNLRHLHA MRRARGNGGR FLNSKGKDGQ DDEASSHGNA  120
QPGSGPTSQN PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2040108165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580559.12e-94nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_020580575.12e-94nuclear transcription factor Y subunit A-7 isoform X3
SwissprotQ84JP12e-40NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A2I0X1S27e-74A0A2I0X1S2_9ASPA; Nuclear transcription factor Y subunit A-7
STRINGGSMUA_Achr4P31650_0016e-55(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.27e-43nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]