PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_01751

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WOX

Protein Properties

Length: 229aa MW: 26108.4 Da PI: 6.6331

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_01751	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ +t++ql++Le+ F++ +ps+++++e+++kl ++++ +V++WFqN+Ra+ kk PEQU_01751 88 RQRWIPTSTQLQILENIFKQgYETPSKQKIAEITSKLakhgHVSDVKVYNWFQNKRARSKK 148 89***************99************************************98 PP
2	Wus_type_Homeobox	92.2	4.8e-30	87	150	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Pt++Q++iLe+++k+G tP+k++i +it++L+++G+++d V++WFQN++aR+++kq PEQU_01751 87 ARQRWIPTSTQLQILENIFKQGYETPSKQKIAEITSKLAKHGHVSDVKVYNWFQNKRARSKKKQ 150 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.766	84	149	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-14	84	151	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-16	86	150	IPR009057	Homeodomain-like
SMART	SM00389	5.1E-10	86	153	IPR001356	Homeobox domain
CDD	cd00086	2.28E-10	88	150	No hit	No description
Pfam	PF00046	3.3E-17	88	148	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MNDFHGRLYE EERAMGDLQG MLDGVLFMKV MTDEQIEVLR RQISIYATIC EQLVAMHRAF 60 TKTLAGNNFG TTSYNPSASA EVPKIAARQR WIPTSTQLQI LENIFKQGYE TPSKQKIAEI 120 TSKLAKHGHV SDVKVYNWFQ NKRARSKKKQ AVLLKSNAEQ ENEAEIESCS RKKMKMDENH 180 ENEEPELNRG EEEHASMDSA GVLCAQEQVN FYENSASLPS KWSHSFSSV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020592734.1	1e-165	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-52	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2I0AX28	2e-67	A0A2I0AX28_9ASPA; WUSCHEL-related homeobox 8
STRING	XP_008812362.1	2e-58	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-48	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]