PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_01868
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 334aa    MW: 37110.4 Da    PI: 7.392
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_01868genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.71.5e-3068170197
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                 f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  + +l+
  PEQU_01868  68 FEKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTQDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaARDRLF 166
                 99***************************9666668889***********************************************9544555666666 PP

                 EEEE CS
          B3  94 vkvf 97 
                 + + 
  PEQU_01868 167 IDWK 170
                 6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4262178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-3065173IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-2666153No hitNo description
PROSITE profilePS5086313.90268173IPR003340B3 DNA binding domain
SMARTSM010191.2E-2168173IPR003340B3 DNA binding domain
PfamPF023626.0E-2868172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MELTQATKDS SKCFGEEEEE EHQFLPPVSS TSHSPSSSAF LLHWTDVPEP SPSSATEPAP  60
TVEKEHMFEK VVTPSDVGKL NRLVIPKQHA EKYFPLDSST QDKGLLLNFE DRNGKPWRFR  120
YSYWNSSQSY VMTKGWSRFV KEKRLDAGDT VSFGRGVGEA ARDRLFIDWK RRPDPHFDSP  180
ASLRIPRFAY HPTSSHHPYL PFPRSSTVPW ATSRFFAPTL ASNYLYFRSP QPSRPSLPMV  240
LDSFPVGQAK PSGKPKSVRL FGVNLEQQHE GGDDIDGSAG FLQLQLRAPD LPSPELRLGA  300
GGGDAVVRSS SSSSSSRGGK DGLIINSPSL DLDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-62631733114B3 domain-containing transcription factor NGA1
5os9_B4e-62631733114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589513.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_020589522.10.0B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR94e-77Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2I0V7Y81e-177A0A2I0V7Y8_9ASPA; B3 domain-containing protein
STRINGXP_008808297.11e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-67B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]