PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_02305
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 539aa    MW: 61489.7 Da    PI: 6.8016
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_02305genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-121152244
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     + W ++E+ ll+++++++G g+W+ +a+++g ++  +qc++++
       PEQU_02305 11 QDWNADEEILLLEGIEMYGLGNWTEVAEHVG-TKNKEQCINHY 52
                     57*****************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250241.1E-1281535IPR016827Transcriptional adaptor 2
SuperFamilySSF466892.99E-13559IPR009057Homeodomain-like
PROSITE profilePS5129322.317860IPR017884SANT domain
SMARTSM007171.9E-11958IPR001005SANT/Myb domain
PfamPF002498.6E-121152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-91153IPR009057Homeodomain-like
CDDcd001674.87E-111355No hitNo description
SuperFamilySSF466891.97E-19436527IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009409Biological Processresponse to cold
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDNLSFPLIC QDWNADEEIL LLEGIEMYGL GNWTEVAEHV GTKNKEQCIN HYTALYMNSP  60
SYPLPDMSRV NGKNRKELLA MAKAQGEGKK EAKQLGFLVK AERPKAMKTF EKRSETVTTI  120
DGGKRPIQIK SEQSRHKYQP SQRYRISVLG DATPKEESPF SPSRFKFEEL SGEVLAGRSP  180
SGLTAGASKK VSNMGQLKDV SDGTKIESLT PVEDHVDRSV GVKKPKYSGD EVPSLTELSG  240
FNSKRQEFDP EYDNDAEQSL AEMEFKETDT DTDRELKLRV LHIYLSRLEE RKRRKDFILE  300
RNLLYPHPLE KELSNEDREL YHRYKVFMRF LSQEDHDALV SNVIEERRIR RKIQELQECR  360
VAGCRTLAEA KMYTDQKRRK EAEANAQKAK EPTALINNNN NKLMQKINKP ISRDKIDEGS  420
PLSMVDNHKI KVAGLDSSSK DSPLTSGQPI LRSFDDWDVT GLPGADLLSE TEQIFCCQNR  480
LFPSHYLKMQ EVLVQEILKG AVAKAADAHQ LFKFDPDKID KIYDLVAKKL GHTEDLFNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E4e-1856857120Transcriptional adapter 2
6cw3_G4e-1856857120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290295RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020570651.10.0transcriptional adapter ADA2-like isoform X1
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2I0VIY00.0A0A2I0VIY0_9ASPA; Transcriptional adapter
STRINGXP_008780988.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]