PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_02469
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRF
Protein Properties Length: 200aa    MW: 21908.1 Da    PI: 9.0003
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_02469genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.28.2e-25135179145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 ++epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr rsrk++e+
  PEQU_02469 135 EPEPGRCRRTDGKKWRCSRDVVQNQKYCERHMHRGRVRSRKTMEA 179
                 69***************************************9986 PP
2QLQ51.23.8e-1870105237
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  FT +Q q+L++Q+l+yKy+  ++PvP +L+++i+k
  PEQU_02469  70 IFTFMQMQELEHQALIYKYMEGGLPVPLHLVLPIWK 105
                 6**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.3E-669105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.79370105IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-1370104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.404135179IPR014977WRC domain
PfamPF088796.0E-21136177IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MATKEHTSSL NDHPFSPPPS KIARLSSHSP TSAQSRLCFP CEKSVTAASP SPLTLGLNGS  60
SVPSPVKKPI FTFMQMQELE HQALIYKYME GGLPVPLHLV LPIWKSVVAA NCGGHQCPSF  120
SGCGGLCLDY RNSLEPEPGR CRRTDGKKWR CSRDVVQNQK YCERHMHRGR VRSRKTMEAE  180
GSSRGGGGDG FDEFVIPAVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176GRVRSRKTM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596998.11e-148growth-regulating factor 10-like isoform X1
RefseqXP_020597005.11e-148growth-regulating factor 10-like isoform X1
SwissprotQ6AWX79e-54GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A2I0XGG19e-91A0A2I0XGG1_9ASPA; Growth-regulating factor 10
STRINGXP_008803298.14e-64(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-28growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]