PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_02596
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 172aa    MW: 19718.7 Da    PI: 10.1925
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_02596genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.1e-191872256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                rk+ +++keq + Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  PEQU_02596 18 RKKLRLSKEQSTLLEEKFREHSTLNPKQKQTLAKQLNLRPRQVEVWFQNRRARTK 72
                677899***********************************************98 PP
2HD-ZIP_I/II123.59.8e-4018107191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq++lLEe+F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e L+r++++l+een+rL++e +eL+ +l
   PEQU_02596  18 RKKLRLSKEQSTLLEEKFREHSTLNPKQKQTLAKQLNLRPRQVEVWFQNRRARTKLKQIEVDCELLRRCCETLREENRRLHRELQELK-AL 107
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.2321474IPR001356Homeobox domain
SMARTSM003891.9E-151678IPR001356Homeobox domain
SuperFamilySSF466894.71E-181683IPR009057Homeodomain-like
CDDcd000865.69E-141875No hitNo description
Gene3DG3DSA:1.10.10.605.4E-171872IPR009057Homeodomain-like
PfamPF000463.4E-161872IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
SMARTSM003401.9E-1874117IPR003106Leucine zipper, homeobox-associated
PfamPF021834.3E-1074108IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEKLSQRGSD EEDEGSCRKK LRLSKEQSTL LEEKFREHST LNPKQKQTLA KQLNLRPRQV  60
EVWFQNRRAR TKLKQIEVDC ELLRRCCETL REENRRLHRE LQELKALKLT AAVTPMYMQL  120
PTAAYTVCPS CERVAAAGAR DGRKATSLTA SSTAIVNKKA LFLNPFSHSA TC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598622.11e-122homeobox-leucine zipper protein HOX19-like
SwissprotA2XE766e-67HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL46e-67HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A2I0XDX25e-85A0A2I0XDX2_9ASPA; Homeobox-leucine zipper protein HOX19
STRINGcassava4.1_026976m5e-73(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-53homeobox from Arabidopsis thaliana