PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_02641

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 188aa MW: 20459.5 Da PI: 7.4075

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_02641	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.4	1.2e-43	22	121	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC++apyfpa++p+kfa vhk+FGasnv+kll++l+ +r+da+sslvyeA+ar+rdPvyG+v+ i++lq+q++ l+a+lal+++ PEQU_02641 22 PCAACKLLRRRCVQDCIFAPYFPADEPQKFATVHKVFGASNVSKLLQELSVVQRSDAVSSLVYEANARVRDPVYGCVASISSLQRQINLLHAQLALAQA 120 7***********************************************************************************************998 PP DUF260 100 e 100 e PEQU_02641 121 E 121 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.19	21	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-43	22	119	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEREAKEMAN RKQGSSGAAV SPCAACKLLR RRCVQDCIFA PYFPADEPQK FATVHKVFGA 60 SNVSKLLQEL SVVQRSDAVS SLVYEANARV RDPVYGCVAS ISSLQRQINL LHAQLALAQA 120 EIVHLHLQHA ALFACSSTVA MTPLCNDATA STNTSQSVIE NANINEKTLF SIEMLLDHPN 180 IGLPMWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-47	15	123	4	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-47	15	123	4	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020586032.1	1e-138	LOB domain-containing protein 4
Swissprot	Q9SHE9	3e-59	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2I0WQB2	1e-125	A0A2I0WQB2_9ASPA; LOB domain-containing protein 4
STRING	Gorai.011G051200.1	3e-71	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-60	LOB domain-containing protein 4