PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_02752

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 321aa MW: 36415.4 Da PI: 7.7896

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_02752	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175	2.1e-54	20	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL kv +++++ ++i vd++k+ePw+Lpk++k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ ++ PEQU_02752 20 LPPGFRFHPTDEELITHYLSIKVLDTNFDP-RAIGVVDLNKCEPWELPKRAKLGEKEWYFFCIRDRKYPTGLRTNRATDSGYWKATGKDKEIYK-GKMI 116 79***********************999.88***********99999*************************************9.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfy+grap+gek++Wvmhe+rle PEQU_02752 117 VGMKKTLVFYRGRAPRGEKSNWVMHEFRLE 146 ***************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-63	16	170	IPR003441	NAC domain
PROSITE profile	PS51005	58.162	20	170	IPR003441	NAC domain
Pfam	PF02365	1.8E-28	21	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MEQGKGIVFC NTEQEYQTDL PPGFRFHPTD EELITHYLSI KVLDTNFDPR AIGVVDLNKC 60 EPWELPKRAK LGEKEWYFFC IRDRKYPTGL RTNRATDSGY WKATGKDKEI YKGKMIVGMK 120 KTLVFYRGRA PRGEKSNWVM HEFRLEGKHS AYSLPGATKN EWVICRVMKK SLVGNGKKAF 180 AVTGKTGSFS HGEEMEMGRL APTPTPTPPP LMDMQAHVTC FSNAMEGQKI QDPELFRFFN 240 PSFHANSSAD MSSIFFSNFS GNGFMNLLEG DLIAKQGCKM EREMLSISQE TGLTSDINPE 300 ISSGNEIGRS NYGECLWNYE N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-52	17	170	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-52	17	170	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-52	17	170	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-52	17	170	14	165	NO APICAL MERISTEM PROTEIN
3swm_A	9e-52	17	170	17	168	NAC domain-containing protein 19
3swm_B	9e-52	17	170	17	168	NAC domain-containing protein 19
3swm_C	9e-52	17	170	17	168	NAC domain-containing protein 19
3swm_D	9e-52	17	170	17	168	NAC domain-containing protein 19
3swp_A	9e-52	17	170	17	168	NAC domain-containing protein 19
3swp_B	9e-52	17	170	17	168	NAC domain-containing protein 19
3swp_C	9e-52	17	170	17	168	NAC domain-containing protein 19
3swp_D	9e-52	17	170	17	168	NAC domain-containing protein 19
4dul_A	7e-52	17	170	14	165	NAC domain-containing protein 19
4dul_B	7e-52	17	170	14	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020589632.1	0.0	NAC domain-containing protein 100-like
Refseq	XP_020589638.1	0.0	NAC domain-containing protein 100-like
Refseq	XP_020589646.1	0.0	NAC domain-containing protein 100-like
Refseq	XP_020589654.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-100	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2I0WGH1	1e-177	A0A2I0WGH1_9ASPA; NAC domain-containing protein 100
STRING	XP_008783580.1	1e-119	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-101	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]