PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03172
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 288aa    MW: 31971.8 Da    PI: 4.7019
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03172genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-2068121356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++t+eq+  Le+ Fe ++++  e++ eLAkklgL+ rqV vWFqNrRa++k
  PEQU_03172  68 KKRRLTPEQVCLLERSFEAENKLEPEKKSELAKKLGLQPRQVAVWFQNRRARWK 121
                 5678*************************************************9 PP
2HD-ZIP_I/II131.92.5e-4267158192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ eqv lLE+sFe+e+kLepe+K+ela++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++ydal ++++ L k++++Lr+++ 
   PEQU_03172  67 EKKRRLTPEQVCLLERSFEAENKLEPEKKSELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDRLKASYDALLADHDILLKDNDRLRSQVI 158
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.68663123IPR001356Homeobox domain
SMARTSM003891.6E-1966127IPR001356Homeobox domain
PfamPF000461.1E-1768121IPR001356Homeobox domain
SuperFamilySSF466892.18E-1968132IPR009057Homeodomain-like
CDDcd000862.72E-1968124No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2169130IPR009057Homeodomain-like
PRINTSPR000311.4E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000311.4E-6103119IPR000047Helix-turn-helix motif
PfamPF021835.2E-18123164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDSGRLIVNS SSSHGGRMLI LGGSSSPLFR GTRSVVSLED GATKRRPFFT TVEELLEEEY  60
YDEQLPEKKR RLTPEQVCLL ERSFEAENKL EPEKKSELAK KLGLQPRQVA VWFQNRRARW  120
KTKQLERDYD RLKASYDALL ADHDILLKDN DRLRSQVISL SEMLREKELL VASKKPCSDI  180
KNEAIEPQLS PPSMQILAIL SQGGGDGLST GSTVVDGEGV VALQVADSSG DSYFQESLIE  240
SGAGGCIEQV HCGVGSEEDG CTSDDGCSYL PGNIFHNQTN ADNWWVWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020600083.10.0homeobox-leucine zipper protein HOX16-like
SwissprotQ6YWR48e-71HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2I0AHS71e-121A0A2I0AHS7_9ASPA; Homeobox-leucine zipper protein HOX16
STRINGXP_008781998.15e-97(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-63homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]